HMMER3/f [3.1b1 | May 2013] NAME Bombinin_msa LENG 26 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Dec 10 17:19:06 2013 NSEQ 10 EFFN 7.729492 CKSUM 3191079561 STATS LOCAL MSV -6.2876 0.72008 STATS LOCAL VITERBI -6.5186 0.72008 STATS LOCAL FORWARD -4.2223 0.72008 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.10094 4.19393 4.47080 3.73245 3.72082 1.94272 4.02864 2.62489 2.46879 1.93144 3.68011 3.40732 3.07651 4.70134 4.44227 2.78487 3.21202 2.79307 6.04435 3.01879 2.68644 4.42251 2.77546 2.73149 3.46380 2.40247 3.72521 3.29380 2.67767 2.69381 4.24716 2.90373 2.73766 3.18173 2.89827 2.37913 2.77546 2.98545 4.58503 3.61529 1.03483 1.16591 1.09938 0.04650 3.09148 0.00000 * 1 4.42372 5.57788 6.47740 6.00248 4.15548 6.02301 6.57303 0.48559 5.90864 1.50260 3.88243 6.22321 6.05234 5.87799 5.92370 5.51142 4.66008 2.65375 6.48090 5.45291 2 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 2 3.74599 5.42007 5.26733 5.13190 5.11243 0.81874 5.90642 0.93956 5.14158 3.95774 5.11962 5.08103 5.21956 5.40761 5.25887 4.06427 4.22052 3.46990 6.70449 5.54327 3 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 3 1.41747 5.06131 5.19713 5.12590 5.89948 0.67334 5.90531 5.41092 5.19424 5.09271 5.82695 4.67050 4.71583 5.29614 5.27311 1.97672 3.72283 4.47736 7.22872 6.18749 4 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 4 1.01862 5.06568 5.06763 4.91770 5.77852 3.85051 5.76301 5.26787 4.95746 4.94889 5.70379 4.60450 0.99979 5.12054 5.10441 1.97261 3.71005 4.41734 7.10926 6.02662 5 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 5 4.14430 5.30272 6.31268 5.87107 4.60541 5.87965 6.71911 1.06251 5.85398 1.85455 4.29749 6.05206 6.02540 6.07590 6.01614 5.35039 4.40196 0.88913 6.86985 5.68586 6 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 6 5.17285 6.29876 6.43856 6.22136 4.37885 5.78886 6.57188 3.73477 6.08775 0.11341 4.20712 6.45547 6.11291 6.06429 5.98290 5.85840 5.43929 4.08261 6.52336 5.54189 7 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 7 3.25602 5.18275 4.91983 4.92331 5.97883 0.94106 5.90545 5.55419 5.18456 5.21525 5.96645 4.67271 4.79746 5.29146 5.30200 0.76220 3.84250 4.61112 7.26591 6.21455 8 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 8 1.01070 5.14826 5.50418 4.95158 3.84874 4.87504 5.35822 3.04037 4.77817 1.29989 1.97373 5.06081 5.21824 4.89377 4.85025 4.23636 4.00569 3.09169 5.75857 4.66974 9 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 9 1.83188 5.00167 5.25784 5.04407 5.16926 1.18487 5.67728 4.08140 4.98691 4.18927 5.11302 4.69200 4.76099 5.14367 5.07643 3.43510 3.70843 0.99437 6.66169 5.53517 10 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 1.56431 0.23475 10 4.14646 6.11026 4.36595 4.10075 6.10091 0.97195 5.11863 5.59979 0.77242 5.00977 5.90718 4.47408 5.17126 4.30473 3.71321 4.20389 4.49471 5.10982 6.86709 5.81719 11 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00724 5.32765 6.04999 0.61958 0.77255 0.14025 2.03365 11 3.64230 5.47387 5.79811 5.72564 5.77653 4.39380 6.33896 4.39087 5.66572 4.74589 5.75867 5.22262 5.23569 5.81998 5.69346 0.75370 4.20130 0.88426 7.33291 6.17552 12 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 12 0.74493 5.50972 5.31188 5.19156 5.11509 2.33324 5.83545 5.21882 5.27474 4.88194 5.76538 4.99507 5.17106 5.43763 5.40906 3.85807 4.18412 4.63549 6.64547 1.15547 13 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 13 5.11994 6.21825 7.14989 6.62157 4.27658 6.72894 7.06571 1.12410 6.54162 0.54334 3.97981 6.95669 6.51583 6.20779 6.40104 6.25197 5.31510 3.47320 6.70210 5.84238 14 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 14 4.15558 6.44564 3.79142 3.64829 6.18145 1.43761 5.01097 5.64659 1.22403 5.05939 5.91295 1.19689 5.14471 4.16589 3.89529 4.11566 4.46309 5.16499 7.08932 5.78286 15 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 15 4.77333 6.61740 5.06418 4.88400 6.79970 0.55027 5.87485 6.39594 1.06387 5.77072 6.70543 5.20801 5.77240 5.10167 4.45818 4.86686 5.17709 5.83541 7.47891 6.57308 16 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 16 5.77579 6.82660 6.95496 6.78164 4.90980 6.22788 7.12677 4.29486 6.71705 0.06327 4.72470 7.04223 6.57518 6.62956 6.55502 6.49512 6.03815 4.68796 7.03612 6.13238 17 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 17 1.21162 5.29137 5.58509 5.22976 4.89149 4.41130 5.73963 4.04876 5.07524 1.37353 4.82979 5.01771 5.12934 5.26334 5.16592 3.86472 1.17911 3.80700 6.49734 5.35696 18 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 18 4.91711 6.74499 5.22820 4.82948 6.70562 5.22351 5.58150 6.20118 0.54273 5.52009 6.46919 5.14230 1.11576 4.76613 3.96518 4.96633 5.19773 5.78054 7.27396 6.34185 19 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 19 4.09486 6.13572 4.41946 4.21496 6.30987 1.22627 5.37086 5.77898 1.33951 5.23854 6.08545 4.58052 1.17187 4.55265 4.11986 4.17496 4.50636 5.18861 7.21992 6.06854 20 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00483 5.73037 6.45271 0.61958 0.77255 0.48576 0.95510 20 4.56201 1.26893 6.64134 6.11910 4.40564 6.03488 6.55047 1.31267 6.00374 1.12161 4.15011 6.25481 6.16211 5.97716 5.99834 5.45916 4.80085 3.01283 6.60915 5.57943 21 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.17154 5.73037 1.86828 0.61958 0.77255 0.48576 0.95510 21 0.96061 5.40791 5.54693 5.58131 6.28309 0.65479 6.32525 5.82092 5.70531 5.51046 6.26015 5.05672 5.06182 5.77080 5.70533 3.71656 4.09670 4.85982 7.55395 6.59555 22 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.14534 5.56453 2.02920 0.61958 0.77255 1.12471 0.39267 22 3.87033 6.09504 3.44771 0.92590 5.85898 4.24004 5.01363 5.31383 3.98893 4.89957 5.78812 3.94126 4.92448 4.20997 4.47017 3.86413 0.90453 4.83337 7.03347 5.65534 23 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00656 5.42575 6.14810 0.61958 0.77255 1.41677 0.27773 23 4.33962 5.91953 5.05777 4.76748 4.00693 4.95812 0.94583 4.38857 4.24691 3.66307 0.87202 4.95908 5.47796 4.84759 4.40037 4.53410 4.65465 4.33403 5.64606 4.06681 24 m - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00656 5.42575 6.14810 0.61958 0.77255 1.41677 0.27773 24 5.69440 6.47145 6.34350 6.39837 0.81691 5.99985 4.51194 5.19715 6.15790 4.24218 5.67942 5.47592 6.23758 5.68588 5.87181 5.43427 5.87211 5.18037 4.57371 0.74340 25 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.10335 5.42576 2.36675 0.61958 0.77255 1.41677 0.27773 25 1.05704 5.49526 5.10239 4.93440 3.67370 4.47934 4.96560 4.56852 4.88002 4.12405 5.22671 4.82810 5.17264 5.07453 4.99726 3.98524 4.25036 4.26155 5.31137 0.74791 26 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00723 5.32963 6.05198 0.61958 0.77255 1.56166 0.23545 26 0.72557 5.30860 4.21131 4.17098 5.75758 3.96562 5.46913 5.28116 4.56169 4.95197 5.76424 1.08242 4.77974 4.75995 4.86625 3.50362 3.87769 4.54071 7.05517 5.83732 27 a - - - 2.68315 4.40000 2.77633 2.72801 3.46467 2.40626 3.72608 3.29467 2.67854 2.69468 4.24803 2.90460 2.73853 3.18260 2.89914 2.38000 2.77633 2.98071 4.58590 3.61616 0.69501 0.69129 * 1.35817 0.29724 0.00000 * //