HMMER3/f [3.1b1 | May 2013] NAME Caerin_msa LENG 25 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Dec 10 17:20:20 2013 NSEQ 18 EFFN 3.405762 CKSUM 3543572392 STATS LOCAL MSV -6.4092 0.72016 STATS LOCAL VITERBI -6.8276 0.72016 STATS LOCAL FORWARD -4.1788 0.72016 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.37538 5.38190 4.64197 3.06854 3.23763 2.53282 2.79646 2.64511 2.75325 1.89508 4.06506 4.60880 2.51852 4.52947 3.98654 3.06450 3.82815 1.79347 6.12517 4.89267 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04275 5.02751 3.34408 0.61958 0.77255 0.00000 * 1 4.50366 6.04381 5.35261 5.40396 6.31150 0.07426 6.31078 6.29552 5.69625 5.72753 6.79409 5.52203 5.43394 5.94080 5.70134 4.72084 5.04585 5.63432 7.01115 6.48515 1 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01011 4.99487 5.71722 0.61958 0.77255 0.43388 1.04409 2 4.72284 5.90765 6.01758 5.76531 4.02489 5.43889 6.13969 3.35347 5.58496 0.17404 3.87022 5.98502 5.76106 5.63574 5.53340 5.36784 4.99323 3.65396 6.15807 5.11838 2 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 3 4.51879 5.66554 6.10684 5.71656 0.78006 5.63753 5.10422 3.14203 5.54576 1.07703 3.62027 5.59505 5.71261 5.31206 5.42425 5.08794 4.72144 3.43779 5.12286 3.57217 3 f - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 4 3.07251 5.22440 3.50299 3.16340 5.10697 1.57636 4.41480 4.57046 1.97974 4.11343 4.90372 3.59404 4.34582 3.57085 3.53419 1.13085 3.44681 4.05096 6.25570 4.94471 4 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 5 2.03886 4.90850 5.64038 5.17208 4.35329 5.03405 5.83009 1.84045 5.08748 2.90785 4.13358 5.26854 5.39127 5.33926 5.24394 4.45193 3.91001 0.62402 6.29758 5.07456 5 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 6 4.53119 5.67998 6.40488 5.84041 3.59281 5.95072 6.17491 2.87396 5.66759 0.40983 1.89199 6.13627 5.81000 5.41695 5.55215 5.41488 4.71566 3.24991 5.95152 5.06385 6 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 7 3.75183 5.45400 4.93866 4.82536 1.80088 0.42058 5.21030 4.67225 4.93744 4.19105 5.30751 4.81906 5.05075 5.11343 5.06084 3.96051 4.23510 4.34458 5.67041 4.11168 7 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 8 2.02367 5.12218 3.63250 3.20556 4.96930 3.71667 4.38598 4.40727 1.92546 3.98034 4.77448 3.61278 4.31242 3.54455 3.49023 0.91073 3.37480 3.91656 6.14961 4.85431 8 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 9 3.85259 5.05760 5.95213 5.54299 4.46709 5.44544 6.39145 1.89017 5.48844 2.85426 4.18878 5.68410 5.71365 5.78247 5.67225 4.92678 4.13373 0.38820 6.67033 5.41554 9 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 10 0.17050 5.21459 5.07231 5.04909 5.63842 3.99260 5.85007 5.01964 5.10633 4.80613 5.76378 4.78753 4.82528 5.32368 5.16786 3.59327 3.94448 4.40538 6.87608 5.90654 10 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 11 3.47427 5.58965 3.81682 3.38533 5.34451 4.05349 4.37219 4.76649 0.60580 4.21812 5.06998 3.78402 4.57895 3.51966 2.97721 1.95745 3.76670 4.33289 6.23679 5.03216 11 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 12 3.94329 5.99077 3.97294 3.54099 5.08482 4.36945 0.63839 4.91728 1.67357 4.28798 5.21000 3.94216 4.80931 3.56918 2.87086 3.91473 4.12007 4.59625 6.07841 4.79491 12 H - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 13 3.90111 5.12723 5.90615 5.44305 4.08553 5.37579 6.03295 2.31896 5.32411 1.45920 3.85226 5.58553 5.60135 5.47959 5.41878 4.82376 4.16395 0.61933 6.23669 5.08876 13 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 14 4.24823 5.46821 6.13670 5.63566 3.71110 5.60055 6.04631 2.71747 5.46981 0.38616 3.45990 5.83452 5.68130 5.38582 5.43872 5.06249 4.48287 2.10507 5.99449 5.00861 14 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 15 4.80785 6.22665 5.49734 5.53139 6.27632 4.86096 6.37615 6.28633 5.70882 5.67900 6.84160 5.70986 0.06742 6.03737 5.71105 5.03232 5.32453 5.77442 7.00863 6.44260 15 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 16 4.06648 5.96295 4.35614 3.83987 4.78406 4.49504 0.47945 4.95871 2.82981 4.32502 5.28660 4.17923 4.94051 3.75330 2.08967 4.07789 4.26017 4.65511 5.94854 4.58891 16 H - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 17 3.92916 5.29807 5.66747 5.46329 4.74302 4.90180 6.18328 2.68340 5.38940 3.29605 4.62252 5.47934 5.47747 5.71088 5.49353 4.57734 4.30643 0.24273 6.64110 5.43748 17 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 18 2.08811 4.91223 5.65113 5.18421 4.35955 5.04674 5.84687 1.83766 5.10081 2.90902 4.13726 5.28137 5.40152 5.35380 5.25794 4.46593 3.91632 0.61103 6.31053 5.08669 18 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 19 4.80785 6.22665 5.49734 5.53139 6.27632 4.86096 6.37615 6.28633 5.70882 5.67900 6.84160 5.70986 0.06742 6.03737 5.71105 5.03232 5.32453 5.77442 7.00863 6.44260 19 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 20 2.04067 4.90961 5.65042 5.18105 4.35395 5.05032 5.83894 1.80513 5.09742 2.90662 4.13303 5.27975 5.40089 5.34916 5.25355 4.46775 3.91409 0.63295 6.30129 5.07778 20 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 21 3.89311 5.08543 5.99837 5.58266 4.40307 5.51397 6.42045 0.44235 5.53109 2.75732 4.11910 5.73836 5.74521 5.79287 5.70168 4.99661 4.16764 1.70227 6.63837 5.41645 21 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 22 0.46158 4.80163 4.86557 4.70223 5.32667 3.62309 5.48002 4.60379 4.66455 4.43043 5.27043 4.37572 4.46550 4.86497 4.79101 3.11851 1.80676 3.95609 6.71262 5.61557 22 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 23 4.59968 6.50723 3.71900 0.14377 6.12046 4.53049 5.39113 5.91802 4.50172 5.34670 6.42061 4.32793 5.21203 4.67902 4.93836 4.53295 4.95457 5.51572 6.98565 5.96716 23 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00979 5.02751 5.74986 0.61958 0.77255 0.48576 0.95510 24 3.89544 5.98139 4.08971 3.52255 5.25864 4.37296 1.22830 4.88580 0.89824 4.23662 5.13629 3.90856 4.76575 3.45204 2.71832 3.86079 4.04496 4.56133 6.09586 4.88277 24 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.11230 5.02751 2.30591 0.61958 0.77255 0.48576 0.95510 25 4.40066 5.56106 6.13178 5.65184 1.81992 5.66186 5.44645 2.90960 5.50076 0.47550 3.36607 5.72509 5.65237 5.26234 5.38829 5.10954 4.59516 3.24531 5.40426 4.04135 25 L - - - 2.68621 4.42229 2.77523 2.73127 3.46357 2.40475 3.72498 3.29358 2.67744 2.69358 4.24693 2.90350 2.73743 3.18150 2.89804 2.37890 2.77523 2.98522 4.58480 3.61507 0.10983 2.26324 * 0.22617 1.59742 0.00000 * //