HMMER3/f [3.1b1 | May 2013] NAME LEAP-2_msa LENG 40 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Dec 10 17:34:04 2013 NSEQ 2 EFFN 0.957031 CKSUM 821885511 STATS LOCAL MSV -7.9075 0.71954 STATS LOCAL VITERBI -8.2093 0.71954 STATS LOCAL FORWARD -4.4647 0.71954 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.63580 2.70896 3.14628 2.87645 3.39590 2.80270 4.33339 2.99442 2.95598 2.51767 3.59621 3.43707 3.05190 3.56797 2.31294 2.49436 2.83523 2.78310 3.93344 4.15722 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.00000 * 1 3.22818 4.73556 4.38072 4.00669 3.37390 4.06281 4.67400 2.58072 3.75609 1.93246 0.90838 4.24478 4.53362 4.12321 3.92476 3.60326 3.54384 2.61917 5.24779 4.03132 1 m - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 2 2.60072 4.44291 3.72219 3.50120 4.26143 3.26925 4.49181 3.42628 3.45014 3.27891 4.31837 3.65342 3.99993 3.83204 3.68721 2.80634 0.75634 3.08776 5.67185 4.48127 2 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 3 3.19079 4.88787 3.83119 3.71984 4.67323 3.55930 4.76407 4.30604 3.80468 3.89579 4.96474 3.99230 0.42670 4.18396 4.00787 3.36966 3.65713 3.91562 5.76798 4.80102 3 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 4 3.65823 4.97641 4.64443 4.42366 0.63080 4.25986 4.04401 3.15667 4.32609 2.46258 3.84836 4.36401 4.71849 4.41478 4.37256 3.90643 3.96289 3.16748 4.22270 2.55978 4 F - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 5 3.87092 5.13189 4.57012 4.35609 3.03125 4.08520 4.31167 3.91936 4.07895 3.25876 4.53745 4.44921 4.62917 4.45069 4.15186 4.07153 4.18850 3.81722 0.45604 3.01968 5 W - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 6 3.36893 5.16684 3.89253 3.35436 4.59793 3.78669 4.08203 4.16929 2.41567 3.63189 4.63303 3.68694 4.28284 3.29535 0.60974 3.44441 3.61983 3.88258 5.56616 4.47112 6 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 7 3.07286 4.80859 3.80590 3.74752 4.86444 0.39215 4.83965 4.54561 3.96816 4.15898 5.14434 3.97152 4.20821 4.26963 4.16228 3.25477 3.57676 4.01699 5.87170 4.97975 7 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 8 3.04772 4.52077 4.52490 4.20689 3.78411 4.01993 4.96423 2.08469 4.07975 2.42579 3.71345 4.34720 4.57128 4.42280 4.26280 3.54983 3.40658 0.72045 5.61496 4.36096 8 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 9 2.48632 4.40511 3.49221 3.33268 4.38611 3.13105 4.42850 3.95425 3.42710 3.65499 4.56252 3.50141 3.89626 3.75438 3.69610 0.72111 2.99037 3.42272 5.73637 4.47449 9 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 10 3.50223 4.88317 4.66053 4.31174 3.27520 4.35194 4.87665 2.50474 4.07716 0.58256 3.22398 4.55913 4.74309 4.37370 4.20100 3.97296 3.78654 2.61647 5.25027 4.03808 10 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 11 3.36893 5.16684 3.89253 3.35436 4.59793 3.78669 4.08203 4.16929 2.41567 3.63189 4.63303 3.68694 4.28284 3.29535 0.60974 3.44441 3.61983 3.88258 5.56616 4.47112 11 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 12 3.19079 4.88787 3.83119 3.71984 4.67323 3.55930 4.76407 4.30604 3.80468 3.89579 4.96474 3.99230 0.42670 4.18396 4.00787 3.36966 3.65713 3.91562 5.76798 4.80102 12 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 13 3.20789 4.48510 5.03149 4.54497 3.69786 4.62660 5.24938 1.18593 4.44242 2.17865 3.48418 4.73968 4.91794 4.69848 4.62541 4.02894 3.47351 1.10266 5.70385 4.49806 13 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 14 3.07286 4.80859 3.80590 3.74752 4.86444 0.39215 4.83965 4.54561 3.96816 4.15898 5.14434 3.97152 4.20821 4.26963 4.16228 3.25477 3.57676 4.01699 5.87170 4.97975 14 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 15 0.66132 4.36643 3.78788 3.60525 4.37149 3.18089 4.58861 3.54308 3.62989 3.41010 4.41752 3.67192 3.94890 3.94527 3.85242 2.71833 3.01668 3.14494 5.76813 4.60540 15 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 16 2.48632 4.40511 3.49221 3.33268 4.38611 3.13105 4.42850 3.95425 3.42710 3.65499 4.56252 3.50141 3.89626 3.75438 3.69610 0.72111 2.99037 3.42272 5.73637 4.47449 16 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 17 2.96918 0.49945 4.54039 4.35432 4.29155 3.52086 4.93821 3.49572 4.18759 3.39221 4.52645 4.26512 4.24933 4.52184 4.25600 3.23991 3.46125 3.21738 5.63237 4.57419 17 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 18 3.36893 5.16684 3.89253 3.35436 4.59793 3.78669 4.08203 4.16929 2.41567 3.63189 4.63303 3.68694 4.28284 3.29535 0.60974 3.44441 3.61983 3.88258 5.56616 4.47112 18 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 19 3.33517 5.47661 0.57385 2.56925 4.90010 3.46049 4.22888 4.56161 3.37433 4.12068 5.11521 3.13678 4.13461 3.47536 3.92304 3.27101 3.68331 4.17246 6.00788 4.73727 19 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 20 3.01784 5.54080 1.38160 2.20571 4.86099 3.29824 3.87527 4.42929 2.90675 3.93240 4.78853 1.57574 3.93232 3.04837 3.50195 2.91301 3.32225 3.98753 6.05662 4.54820 20 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 21 2.48632 4.40511 3.49221 3.33268 4.38611 3.13105 4.42850 3.95425 3.42710 3.65499 4.56252 3.50141 3.89626 3.75438 3.69610 0.72111 2.99037 3.42272 5.73637 4.47449 21 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 22 3.24066 5.38076 2.65595 0.66943 4.76935 3.48965 4.11608 4.28437 3.03689 3.85831 4.83072 3.14439 4.11159 3.33273 3.46841 3.19922 3.55078 3.94182 5.88440 4.62104 22 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 23 2.96918 0.49945 4.54039 4.35432 4.29155 3.52086 4.93821 3.49572 4.18759 3.39221 4.52645 4.26512 4.24933 4.52184 4.25600 3.23991 3.46125 3.21738 5.63237 4.57419 23 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 24 3.26733 4.61804 4.73382 4.36903 3.59007 4.36969 5.05240 0.77349 4.20333 2.12647 3.49054 4.57504 4.78198 4.52765 4.36790 3.90256 3.56499 1.90015 5.53461 4.29194 24 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 25 2.60072 4.44291 3.72219 3.50120 4.26143 3.26925 4.49181 3.42628 3.45014 3.27891 4.31837 3.65342 3.99993 3.83204 3.68721 2.80634 0.75634 3.08776 5.67185 4.48127 25 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 26 2.87010 4.69006 3.62680 3.01806 3.76257 3.69914 3.86784 3.09825 2.45412 2.62607 1.97482 3.40469 4.09578 3.10348 1.70890 3.02574 3.10066 2.93261 5.18109 3.94783 26 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 27 3.50223 4.88317 4.66053 4.31174 3.27520 4.35194 4.87665 2.50474 4.07716 0.58256 3.22398 4.55913 4.74309 4.37370 4.20100 3.97296 3.78654 2.61647 5.25027 4.03808 27 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 28 2.96918 0.49945 4.54039 4.35432 4.29155 3.52086 4.93821 3.49572 4.18759 3.39221 4.52645 4.26512 4.24933 4.52184 4.25600 3.23991 3.46125 3.21738 5.63237 4.57419 28 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 29 3.36893 5.16684 3.89253 3.35436 4.59793 3.78669 4.08203 4.16929 2.41567 3.63189 4.63303 3.68694 4.28284 3.29535 0.60974 3.44441 3.61983 3.88258 5.56616 4.47112 29 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 30 3.26834 5.22016 3.46233 3.04154 4.67500 3.71360 3.95999 4.12588 0.69579 3.63152 4.58688 3.44909 4.20119 3.14177 2.53596 3.29688 3.50438 3.82071 5.61546 4.47604 30 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 31 2.90307 5.08422 3.08297 2.65128 4.47649 3.52577 3.74233 3.95652 2.24404 3.46469 4.31197 1.78468 3.98920 2.89389 1.59244 2.91039 3.14645 3.59544 5.53858 4.25274 31 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 32 3.36893 5.16684 3.89253 3.35436 4.59793 3.78669 4.08203 4.16929 2.41567 3.63189 4.63303 3.68694 4.28284 3.29535 0.60974 3.44441 3.61983 3.88258 5.56616 4.47112 32 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 33 2.96918 0.49945 4.54039 4.35432 4.29155 3.52086 4.93821 3.49572 4.18759 3.39221 4.52645 4.26512 4.24933 4.52184 4.25600 3.23991 3.46125 3.21738 5.63237 4.57419 33 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 34 2.69084 4.41050 3.74370 3.33903 1.69003 3.52457 3.96380 3.05885 3.30476 2.70486 3.72918 3.57001 4.07840 3.57702 3.58142 1.65379 3.03631 2.83199 4.63748 3.11046 34 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 35 3.50223 4.88317 4.66053 4.31174 3.27520 4.35194 4.87665 2.50474 4.07716 0.58256 3.22398 4.55913 4.74309 4.37370 4.20100 3.97296 3.78654 2.61647 5.25027 4.03808 35 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 36 2.70333 4.77150 3.26251 2.78212 4.33831 3.40576 3.82690 3.78323 2.39441 3.35608 4.20346 3.19103 3.93070 2.99843 1.64225 1.67479 3.01511 3.39964 5.50117 4.23248 36 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 37 2.65426 4.31434 4.04603 3.61009 3.77380 3.57891 4.45221 2.35956 3.50710 2.58500 3.68048 3.79713 4.16602 3.82689 3.76466 2.98497 1.70294 1.39110 5.40132 4.18283 37 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 38 0.66132 4.36643 3.78788 3.60525 4.37149 3.18089 4.58861 3.54308 3.62989 3.41010 4.41752 3.67192 3.94890 3.94527 3.85242 2.71833 3.01668 3.14494 5.76813 4.60540 38 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 39 2.69114 4.84016 2.89816 2.57807 4.33697 3.33945 3.83009 3.82832 2.57027 3.40202 4.24462 3.05147 3.89066 1.76686 2.94811 1.68191 3.00859 3.43430 5.56556 4.22579 39 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02331 4.16618 4.88853 0.61958 0.77255 0.48576 0.95510 40 3.24066 5.38076 2.65595 0.66943 4.76935 3.48965 4.11608 4.28437 3.03689 3.85831 4.83072 3.14439 4.11159 3.33273 3.46841 3.19922 3.55078 3.94182 5.88440 4.62104 40 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01575 4.15862 * 0.61958 0.77255 0.00000 * //