HMMER3/f [3.1b1 | May 2013] NAME Palustrin_msa LENG 29 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Dec 10 17:38:24 2013 NSEQ 17 EFFN 8.553955 CKSUM 2968253189 STATS LOCAL MSV -6.5547 0.71993 STATS LOCAL VITERBI -6.8393 0.71993 STATS LOCAL FORWARD -3.9026 0.71993 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.63883 2.85477 3.15920 3.15162 3.36285 2.14616 4.64788 2.79611 2.16891 2.43219 3.81447 2.73331 3.95534 3.89860 3.41368 2.90545 2.95422 2.58677 4.79272 4.45603 2.69101 4.42708 2.78003 2.73607 3.45860 2.39746 3.72978 3.26025 2.67027 2.69838 4.25173 2.90271 2.73749 3.18630 2.90284 2.38370 2.77662 2.98395 4.58960 3.61986 0.66269 0.92202 2.44385 2.71464 0.06852 0.00000 * 1 1.99304 5.56735 5.64222 5.69763 6.44496 0.24813 6.47226 6.00601 5.86564 5.68568 6.44135 5.20534 5.21245 5.92685 5.86017 3.88079 4.26259 5.03351 7.68250 6.75217 18 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00515 5.66727 6.38962 0.61958 0.77255 0.30753 1.32900 2 2.62622 5.73296 6.47629 5.89249 1.83549 5.80591 6.12804 1.16865 5.72992 1.03363 4.03018 5.98143 5.96422 5.68272 5.68813 5.17027 4.69523 3.38225 6.28929 5.23332 19 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 3 3.70145 5.07599 5.53638 4.93212 2.17547 4.86799 5.14895 2.88774 1.36948 1.85025 2.72876 4.98190 5.19771 4.86145 4.77128 4.18065 3.92925 3.25886 1.69170 4.40285 20 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 4 4.38615 6.91770 1.97002 3.48008 6.58088 4.52007 5.31782 6.20639 4.55245 5.65326 6.56256 1.69877 5.25296 4.51628 5.27997 0.57464 4.77186 5.62222 7.78595 6.17393 21 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 5 3.61966 5.04209 5.47293 4.90438 4.14644 4.74458 5.21930 1.78898 4.72548 1.22206 4.11643 4.93890 5.15558 4.88744 4.79216 1.79571 1.68675 3.10140 5.75202 4.58286 22 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 6 1.91582 5.56813 6.50988 6.03505 4.95238 5.98142 6.68704 1.32758 5.97047 1.75206 4.69937 6.15527 6.20522 6.20089 6.10264 5.40554 4.62792 1.02885 7.00400 5.79178 23 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 7 5.01716 6.86500 6.07041 4.72127 6.67975 5.38867 4.98665 5.81575 0.29582 5.03941 5.97854 4.90909 5.66183 4.11341 1.80581 4.97429 5.02447 5.54913 6.89245 5.94800 24 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 8 4.06980 6.32079 3.55738 2.69494 5.77065 0.82869 5.09870 2.07602 4.11671 4.81302 5.68823 1.54029 5.10568 4.29662 4.64340 4.04895 4.39927 4.80207 7.05020 5.63919 25 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.19126 5.82227 1.76540 0.61958 0.77255 0.48576 0.95510 9 1.66325 5.10269 5.76606 5.19302 2.69678 5.04690 5.45723 2.88233 5.01869 1.84900 4.06086 5.22051 5.37024 5.14569 5.05107 4.38952 4.02256 0.87727 5.87987 4.70646 26 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00531 5.63633 6.35868 0.61958 0.77255 0.20359 1.69170 10 1.66319 5.52692 5.70787 5.60667 5.83832 0.59982 6.26329 5.18066 5.57837 1.78388 5.81425 5.18217 5.22957 5.72655 5.63098 3.89153 4.21920 4.62858 7.30761 6.20684 27 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 11 3.74156 5.99782 4.01474 2.46289 5.35131 4.45531 4.57516 4.74426 1.07462 4.26104 1.38758 3.96760 4.85397 3.70560 3.42747 3.73792 2.27794 4.39711 6.41059 5.12302 28 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 12 4.29573 6.46642 4.34471 3.97069 6.21992 4.77908 4.96625 5.57856 0.47083 4.95382 5.81939 1.82155 5.27702 4.10381 3.48782 4.27952 2.81858 5.16327 6.93813 5.76260 29 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 13 4.71182 5.88169 6.80629 6.29055 3.03338 6.29275 6.78881 2.34281 6.21071 1.12391 4.25158 6.47286 6.34513 6.16522 6.21177 5.72671 4.94126 0.74498 6.78231 5.76576 30 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 14 1.03959 5.55075 5.83639 5.74942 0.80366 2.26695 6.12917 5.29515 5.73131 4.97492 5.87679 5.23214 5.26576 5.80488 5.73747 3.92964 4.25814 4.70250 6.86211 5.45254 31 f - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 15 2.89261 5.19073 4.10109 3.53693 4.35223 2.43483 4.54533 2.92240 1.11462 2.65078 4.29271 2.99759 4.68837 3.81858 3.87342 3.53974 3.59999 1.93926 5.76480 4.51141 32 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 16 1.18402 5.39517 4.75678 4.32460 5.12012 4.31997 5.29439 4.48559 4.30481 4.19729 1.89920 1.54172 4.97876 4.59732 4.62814 3.71909 1.79613 4.10866 6.52419 5.30857 33 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 17 3.98361 5.54372 5.98494 5.69561 5.04857 0.80983 6.23924 3.37241 5.57104 2.54963 4.93891 5.52243 5.60121 5.78367 5.64852 4.42378 4.40290 1.04475 6.84519 5.64418 34 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 18 4.94975 6.13781 6.89257 6.29296 4.21539 6.34124 6.58436 1.65185 6.12886 0.54578 2.68252 6.51171 6.29282 2.45219 6.02670 5.74246 5.13814 3.80920 6.49410 5.59428 35 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 19 1.80924 6.58162 0.93790 3.44851 6.25588 4.44205 5.14686 5.81117 4.21965 5.28428 6.11819 1.59133 5.11678 4.31841 4.84229 2.14995 4.48600 5.26293 7.42689 5.90645 36 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 20 3.42327 5.49235 3.90283 3.34631 2.60176 4.26604 4.46511 4.10308 1.42198 2.61956 4.57943 1.42369 4.65793 3.64966 3.65550 3.49378 2.29312 3.81489 5.99003 4.67749 37 k - - - 2.68710 4.42317 2.77612 2.73215 3.46446 2.40265 3.72587 3.28621 2.67833 2.69447 4.24782 2.89880 2.73832 3.18238 2.89893 2.37979 2.77612 2.98610 4.58569 3.61595 0.40297 1.10797 6.54462 1.08015 0.41482 0.48576 0.95510 21 4.32576 5.54340 6.43047 5.93286 4.81669 5.86370 6.48722 1.18343 5.84133 2.00579 4.58912 6.03758 6.10159 6.03382 5.94414 5.26883 1.07622 1.88426 6.81591 5.63158 41 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 22 4.33290 6.53484 4.63520 3.97975 6.13544 1.27186 4.78889 5.44171 1.64459 4.77851 5.63515 1.87130 5.25206 3.90805 1.42083 4.28920 4.48130 5.08549 6.74582 5.60593 42 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 23 5.96093 0.02044 7.01074 7.08676 7.33850 5.88288 7.55558 7.38416 7.16959 6.78756 8.00969 7.08079 6.59001 7.44182 6.96358 6.24001 6.49499 6.87979 7.94978 7.56192 43 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 24 4.16905 6.70826 3.55961 2.60257 6.10048 3.04779 4.90117 5.58215 0.82824 4.99745 5.82816 1.23055 5.08390 4.04291 4.01063 4.06196 4.42166 5.14413 7.07760 5.66815 44 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 25 2.51765 5.20557 4.49230 1.70393 4.40833 4.59219 4.91273 1.59658 3.97880 3.38697 4.34735 2.46089 4.98285 4.26862 4.31585 3.87528 3.81787 1.39103 5.92088 4.68861 45 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 26 1.87698 5.73875 1.76027 3.07638 5.06296 2.94355 4.33343 4.52212 3.09177 4.04832 4.81422 3.61514 4.52307 3.44712 2.38040 3.32619 1.68445 4.12466 6.21854 2.66116 46 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.26244 5.82227 1.47900 0.61958 0.77255 0.48576 0.95510 27 4.14355 6.70921 1.89304 3.24446 6.17363 0.75162 4.95407 5.73624 1.57497 5.17197 6.04619 3.82769 4.99772 4.12873 4.50969 4.01610 4.46305 5.24342 7.27101 5.76234 47 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00570 5.56554 6.28789 0.61958 0.77255 0.17062 1.85239 28 4.37683 6.90407 3.56386 1.15060 6.36268 0.98660 5.09768 5.87056 1.77575 5.27655 6.14747 4.08386 5.22533 4.25928 4.28956 4.25296 4.66061 5.41288 7.34053 5.91555 48 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00441 5.82227 6.54462 0.61958 0.77255 0.48576 0.95510 29 5.96093 0.02044 7.01074 7.08676 7.33850 5.88288 7.55558 7.38416 7.16959 6.78756 8.00969 7.08079 6.59001 7.44182 6.96358 6.24001 6.49499 6.87979 7.94978 7.56192 49 C - - - 2.68745 4.42352 2.77435 2.73048 3.46481 2.40639 3.72621 3.29481 2.67617 2.69482 4.24816 2.90473 2.73458 3.18273 2.89783 2.37814 2.77370 2.98385 4.58604 3.61630 0.50533 0.92459 * 1.39582 0.28453 0.00000 * //