HMMER3/f [3.1b1 | May 2013] NAME Cyclotide_msa LENG 30 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Dec 10 17:28:09 2013 NSEQ 53 EFFN 4.984924 CKSUM 3390143439 STATS LOCAL MSV -7.8308 0.71988 STATS LOCAL VITERBI -8.1539 0.71988 STATS LOCAL FORWARD -4.1730 0.71988 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.90111 1.71666 3.62502 2.91200 3.48652 2.51066 4.47474 2.85752 2.95238 2.99474 4.29078 3.16096 3.11995 3.79995 3.50629 2.53919 2.62830 2.79074 4.67652 3.61081 2.68664 4.41872 2.77491 2.73169 3.46400 2.40379 3.72541 3.29400 2.67717 2.69401 4.24736 2.90393 2.73786 3.18193 2.89760 2.37916 2.77566 2.98470 4.58523 3.61371 0.63557 1.01907 2.21242 0.79410 0.60146 0.00000 * 1 2.17359 5.29117 3.33157 2.77598 4.57550 1.69733 3.99949 4.01262 2.47992 3.17063 4.36560 3.30568 2.83617 2.87811 3.24757 2.21913 2.77627 3.26030 5.78401 4.42365 6 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00798 5.23074 5.95309 0.61958 0.77255 0.70879 0.67774 2 3.23004 4.59277 5.12411 4.52739 3.33157 4.43539 4.78809 1.10538 3.59138 1.81956 3.67796 4.56822 4.78337 4.49534 4.39098 3.75214 2.09710 2.10630 5.29116 4.11465 7 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00779 5.25487 5.97722 0.61958 0.77255 0.62637 0.76470 3 2.61337 4.64610 4.20277 3.63167 2.41605 4.07903 4.38680 3.12842 3.55115 2.46725 3.77099 3.95009 1.19084 3.82408 3.25428 2.74741 3.29026 2.67295 5.25868 4.04719 8 p - - - 2.68620 4.41793 2.77506 2.73139 3.46370 2.40529 3.72510 3.29304 2.67757 2.69371 4.24706 2.90336 2.73755 3.18162 2.89816 2.37903 2.77524 2.98471 4.58493 3.61519 0.35495 1.21631 6.00451 0.07337 2.64875 0.37199 1.16912 4 3.83909 0.22582 5.92095 5.94152 6.24909 2.22538 6.45594 5.85982 5.87942 5.54581 6.41482 5.39391 5.26837 6.03408 5.80208 4.06917 4.42647 5.06462 7.31621 6.53505 10 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.07256 5.34404 2.73002 0.61958 0.77255 0.48576 0.95510 5 2.48857 5.53377 3.56188 2.65243 5.80043 0.40879 5.13698 5.29405 4.23661 4.90005 5.73710 3.98159 4.74148 4.37336 4.68715 3.55973 3.95568 4.63006 7.04870 5.73412 11 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00760 5.27908 6.00142 0.61958 0.77255 0.36784 1.17840 6 3.85883 6.22344 3.15910 0.31607 5.96206 3.51859 4.88953 5.49237 3.95386 5.00292 5.88407 3.73339 4.82577 4.08182 4.51626 3.79877 3.23289 4.95973 7.12679 5.65038 12 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 7 3.18107 5.10403 5.10358 5.00603 5.80867 3.88787 5.83217 5.29566 5.03016 5.00082 5.77170 4.65957 4.74682 5.21060 5.14559 0.76937 0.95634 4.45320 7.14673 6.06045 13 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 8 5.08141 0.04566 6.38680 6.43875 6.54997 5.21246 6.90067 6.32744 6.44812 5.92351 7.11830 6.32580 5.94306 6.72521 6.29114 5.34843 5.62579 5.87871 7.35568 6.77969 14 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 9 2.45022 4.51093 4.87833 4.27604 1.94661 4.25340 4.57504 2.92832 4.09786 2.50136 3.62683 4.35050 4.61874 4.26732 2.78019 3.55686 3.16226 1.12883 5.12784 3.31670 15 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 10 3.09225 4.48652 4.93421 4.32697 2.10422 2.62995 4.57461 2.92085 2.92333 2.10629 2.75513 4.36932 4.61272 4.29201 4.18908 3.55372 2.79083 1.93362 2.17897 3.63137 16 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 11 3.52793 4.87998 5.39171 4.82035 2.88458 1.70810 5.08656 0.92890 4.64815 2.09107 3.78401 4.87590 5.07059 4.78110 4.70005 4.07291 3.76806 2.69764 5.52207 4.31088 17 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 12 3.15192 5.34596 3.67960 3.21100 5.05671 3.08011 4.43258 4.50959 2.16658 4.06482 4.84338 3.66847 1.08527 3.57353 3.63205 2.48957 1.93533 4.04115 6.23912 4.90670 18 p - - - 2.68622 4.42230 2.77524 2.73128 3.46358 2.40517 3.72499 3.29358 2.67745 2.69359 4.24694 2.90351 2.73744 3.18151 2.89805 2.37891 2.77524 2.98431 4.58481 3.61508 0.09089 2.47031 6.06639 0.19464 1.73236 0.48576 0.95510 13 4.25923 0.23760 6.07017 5.94663 2.55664 4.87754 5.58605 4.44004 5.78252 3.97199 5.28765 5.54483 5.56532 5.84472 5.70565 4.53445 4.73437 4.29676 5.81368 4.22352 20 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 14 3.09401 3.03847 5.02092 4.40823 2.92397 4.25932 4.59022 1.72246 4.20119 2.30593 3.59296 2.65746 4.62333 4.33923 4.22229 3.56905 2.18270 2.50622 3.78451 1.99265 21 i - - - 2.68629 4.42236 2.77531 2.73134 3.46249 2.40524 3.72506 3.29365 2.67752 2.69366 4.24701 2.90358 2.73751 3.18157 2.89812 2.37898 2.77531 2.98470 4.58488 3.61342 0.78555 1.61385 1.06418 0.09847 2.36681 0.48576 0.95510 15 2.81829 4.74989 4.44132 4.22868 5.21289 3.53181 5.18224 4.65172 4.25099 4.35968 5.16226 4.13777 4.34975 4.50175 4.47375 0.88388 1.09954 3.95442 6.55453 5.40051 23 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01085 4.92444 5.64678 0.61958 0.77255 1.34575 0.30157 16 1.13202 5.05852 3.35230 2.21892 4.70162 3.27578 4.17077 4.14523 2.99715 3.72714 4.51837 3.38687 4.16422 3.32272 3.45650 1.92421 2.74519 3.70675 5.93138 4.59555 24 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01085 4.92444 5.64678 0.61958 0.77255 0.17772 1.81508 17 1.76456 4.60329 4.74491 4.15807 3.72821 4.29787 4.62669 2.29255 3.35370 2.39157 3.72798 4.32484 4.66536 4.23045 4.17146 3.59526 1.47074 1.81148 5.26158 4.07229 25 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 18 2.67104 4.54862 5.06501 4.45982 2.70476 4.34743 4.68700 1.51039 4.26610 1.95382 3.65011 4.48557 1.73375 4.41234 4.30424 3.65909 3.03421 2.30401 5.19681 4.02023 26 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 19 3.74160 6.04058 3.01359 3.20131 5.80066 0.44095 4.83068 5.33550 3.79833 4.84019 5.69707 2.59067 4.77541 4.01831 3.32268 3.71269 4.11964 4.80878 6.96630 5.53215 27 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 20 5.08141 0.04566 6.38680 6.43875 6.54997 5.21246 6.90067 6.32744 6.44812 5.92351 7.11830 6.32580 5.94306 6.72521 6.29114 5.34843 5.62579 5.87871 7.35568 6.77969 28 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 21 2.90205 5.32095 3.45414 2.90470 4.62474 3.47844 4.10922 4.05266 2.56041 3.63210 4.43113 3.42268 4.28538 3.24717 3.03809 1.08041 1.98708 3.70146 5.84940 3.63417 29 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 22 5.08141 0.04566 6.38680 6.43875 6.54997 5.21246 6.90067 6.32744 6.44812 5.92351 7.11830 6.32580 5.94306 6.72521 6.29114 5.34843 5.62579 5.87871 7.35568 6.77969 30 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00712 5.34404 6.06639 0.61958 0.77255 0.48576 0.95510 23 3.07514 5.59162 2.39621 2.55684 4.93534 3.25874 4.02864 4.42321 1.50999 3.89616 4.63450 2.99426 4.23008 2.65188 3.26828 1.61324 2.96389 3.98190 6.02350 4.60845 31 k - - - 2.68638 4.42245 2.77466 2.73131 3.46374 2.40533 3.72515 3.29374 2.67727 2.69375 4.24710 2.90333 2.73741 3.18167 2.89737 2.37852 2.77540 2.98539 4.58497 3.61524 0.22601 1.60960 6.06639 0.60014 0.79570 0.48576 0.95510 24 3.08033 5.46296 2.41202 2.80324 4.71466 3.85413 4.05821 4.21097 2.60149 3.74521 4.52035 1.70256 4.25669 3.17984 3.31071 2.08170 3.31313 3.82773 2.79305 2.20689 35 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.09375 5.34404 2.46844 0.61958 0.77255 0.48576 0.95510 25 3.14069 5.57367 3.36742 2.84129 4.96266 2.25188 4.06840 4.42371 1.36786 3.90140 4.66228 3.02234 1.83272 3.17543 2.85376 2.78168 3.37385 4.00087 6.02282 4.65230 36 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00776 5.25805 5.98040 0.61958 0.77255 0.76925 0.62243 26 3.45698 4.78677 5.41064 4.81949 2.49803 4.70418 5.06106 2.06198 4.63554 1.89597 3.68725 4.85451 5.01580 3.52677 4.66102 4.03302 3.68978 0.85677 5.48690 4.32880 37 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00776 5.25805 5.98040 0.61958 0.77255 0.76925 0.62243 27 4.92057 0.05334 6.26697 6.31157 6.39630 5.08727 6.77394 6.12099 6.30519 5.75113 6.94195 6.18258 5.82154 6.58489 6.15982 5.18646 5.46518 5.68583 7.24213 6.62871 38 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00776 5.25805 5.98040 0.61958 0.77255 0.76925 0.62243 28 2.86897 4.77181 3.94003 3.37332 3.26753 4.02825 4.27314 3.26811 1.97384 2.98201 3.87988 3.77160 4.41108 3.61904 3.64287 3.27890 2.13934 2.79479 5.31871 1.37320 39 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06282 5.25805 2.88801 0.61958 0.77255 0.76925 0.62243 29 3.05705 5.45715 3.35725 2.78545 4.07737 3.21337 3.03252 4.23367 1.74950 2.69541 4.50860 2.78267 4.21879 3.09908 1.43751 3.03677 3.28105 3.83971 5.88530 4.52227 40 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.09720 5.20343 2.44041 0.61958 0.77255 0.90564 0.51799 30 3.26832 5.62662 2.24888 2.80771 4.99413 3.82809 4.25872 3.33241 3.14219 4.00722 4.82374 0.79529 4.36227 3.40861 3.65760 3.24007 2.91074 4.03425 6.20569 4.79283 41 n - - - 2.68636 4.42243 2.77538 2.73142 3.46372 2.40502 3.72513 3.29278 2.67759 2.69351 4.24708 2.90300 2.73718 3.18165 2.89819 2.37854 2.77538 2.98537 4.58495 3.61521 0.21199 1.65534 * 0.74951 0.63979 0.00000 * //