HMMER3/f [3.1b1 | May 2013] NAME Rugosin_msa LENG 33 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Dec 10 17:42:50 2013 NSEQ 8 EFFN 3.144531 CKSUM 2522211171 STATS LOCAL MSV -7.1432 0.71974 STATS LOCAL VITERBI -7.5371 0.71974 STATS LOCAL FORWARD -4.1717 0.71974 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.27390 2.83239 3.01562 3.47137 3.67992 2.57330 4.64373 2.60417 1.97508 2.18243 3.92964 3.60597 4.40387 3.49746 3.57502 2.55756 2.93467 2.92580 5.33010 4.19446 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.00000 * 1 2.91742 4.85682 4.37915 4.30741 5.51036 1.32753 5.37492 5.05845 4.53938 4.71544 5.48448 4.22122 4.43667 4.71115 4.74538 0.66564 3.48431 4.20751 6.80503 5.68829 1 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 2 4.12827 5.30631 6.11670 5.60493 3.77180 5.64259 6.08403 0.85878 5.48116 1.01371 3.50946 5.81696 5.68138 5.43239 5.47893 5.09047 4.35486 2.51536 6.05028 5.04159 2 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 3 3.48801 4.94858 4.80019 4.20481 1.78491 4.53006 4.56526 3.05580 3.79324 1.31638 3.61778 4.41631 4.84219 4.18922 1.48370 3.85100 3.70921 3.06340 5.08851 3.68635 3 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 4 3.51919 6.09598 0.89615 2.68160 5.52264 3.77531 4.39147 5.08326 3.45529 4.54894 5.39507 2.10751 4.42766 3.55976 4.08656 1.70432 3.83743 4.59374 6.69172 5.14954 4 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 5 2.94620 5.03941 3.43610 2.87947 4.31423 3.77075 4.00243 3.70165 1.52120 2.00344 4.16679 3.36631 4.18006 3.17348 3.14323 2.10411 2.33512 3.39707 5.59019 4.29258 5 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 6 3.24563 4.64106 4.98601 4.46504 1.62738 2.90574 4.68735 1.04388 4.30846 2.55991 3.67387 4.50974 4.76337 4.46369 4.38540 3.72433 3.50459 2.55160 5.12544 3.77768 6 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 7 4.46441 6.17795 4.71024 4.24617 5.85439 4.66695 4.94347 5.42552 0.18782 4.78032 5.77989 4.57768 5.16936 4.14508 3.33901 4.49909 4.67861 5.10588 6.50945 5.57282 7 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 8 1.87862 5.35142 2.27753 2.65828 4.72342 3.67574 3.97196 4.18417 2.76018 3.71294 4.48703 3.19806 4.12787 2.12262 3.25103 2.94830 1.61996 3.77618 5.88455 4.49290 8 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 9 2.94844 4.33777 4.78698 4.18457 2.19188 2.11385 4.40094 1.62813 3.99467 2.45602 2.75406 4.22091 4.46375 4.14186 4.04262 3.41147 3.18043 2.56639 2.71951 3.68409 9 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 10 0.18851 5.13927 4.96929 4.93484 5.53722 3.91957 5.75163 4.89819 4.99010 4.69379 5.65580 4.69659 4.74975 5.21562 5.06500 3.51537 3.86402 4.30233 6.79092 5.80333 10 A - - - 2.68674 4.42281 2.77576 2.73180 3.46150 2.40346 3.72551 3.29410 2.67591 2.69291 4.24746 2.90403 2.73796 3.18203 2.89857 2.37943 2.77576 2.98456 4.58533 3.61559 0.45554 1.01472 5.68628 1.33194 0.30648 0.48576 0.95510 11 3.55008 5.21017 4.38959 3.80171 4.41591 4.39421 4.55550 1.06042 1.21924 3.16555 4.28923 4.14037 4.78832 3.78906 3.20460 3.80568 3.77772 2.92513 5.86760 4.66443 15 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 12 3.55692 6.16298 0.88476 2.67518 5.56574 3.78212 4.40536 5.13362 3.48771 4.59354 5.44794 1.66920 4.44150 3.57615 4.13227 2.14933 3.87517 4.64363 6.73569 5.17951 16 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 13 4.33518 5.49787 6.25544 5.71843 3.62412 5.79453 6.10826 1.87369 5.57177 0.41847 3.35644 5.97656 5.73186 5.39563 5.50078 5.25342 4.53988 2.88510 5.95407 5.01502 17 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 14 1.17336 4.77093 5.12940 4.58386 3.76436 4.59534 5.07140 1.72761 4.44129 1.50380 3.63057 4.72271 4.94504 4.62307 4.56363 3.94617 3.64978 2.39878 5.57190 4.42092 18 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 15 4.46441 6.17795 4.71024 4.24617 5.85439 4.66695 4.94347 5.42552 0.18782 4.78032 5.77989 4.57768 5.16936 4.14508 3.33901 4.49909 4.67861 5.10588 6.50945 5.57282 19 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 16 3.01904 5.18431 3.35482 3.06363 5.04327 1.57904 4.38309 4.52526 3.20476 4.07761 4.86713 3.51171 4.28888 1.78195 3.63458 1.33428 3.39820 4.00343 6.23248 4.89418 20 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 17 0.53511 4.82324 4.67516 4.59248 5.48472 1.54522 5.49329 4.95019 4.71272 4.66141 5.44764 4.33549 4.45100 4.87175 4.84841 3.11623 3.48063 4.14611 6.79564 5.73356 21 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.24247 4.96393 1.56866 0.61958 0.77255 0.48576 0.95510 18 1.46728 4.65499 4.27844 4.17952 5.22361 0.67225 5.18146 4.67127 4.34095 4.38577 5.18933 4.06371 4.25376 4.53165 4.53068 2.93465 3.29414 3.92264 6.53314 5.43536 22 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01314 4.73461 5.45695 0.61958 0.77255 0.92878 0.50259 19 2.86673 5.09719 3.24211 2.67693 4.37380 3.66393 3.83406 3.78478 1.97033 3.35733 2.95561 3.18721 4.05393 2.04951 2.92590 2.88660 1.75065 3.45128 5.57032 4.24781 23 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01314 4.73461 5.45695 0.61958 0.77255 0.92878 0.50259 20 4.03629 5.64747 4.86405 4.88937 5.87255 0.12208 5.86623 5.76094 5.17103 5.25777 6.29358 5.03213 5.04688 5.42976 5.23859 4.24218 4.57239 5.12938 6.66732 6.02747 24 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01314 4.73461 5.45695 0.61958 0.77255 0.92878 0.50259 21 3.62105 4.83550 5.66731 5.22892 4.20382 5.18996 6.01552 1.61192 5.16087 2.61940 3.94039 5.38410 5.45081 5.43756 5.33870 4.64424 3.89432 0.54440 6.34339 5.10706 25 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01314 4.73461 5.45695 0.61958 0.77255 0.28377 1.39811 22 1.69094 5.00448 5.06383 4.67978 3.88287 4.38397 5.27018 2.98329 4.51780 0.63706 3.73931 4.74393 4.92412 4.73294 4.63741 3.83458 3.81033 2.98736 5.80088 4.67506 26 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 23 2.99110 5.40475 3.24691 2.70356 4.77919 3.73665 3.91223 4.23261 1.47089 3.71846 4.48499 3.22997 4.13960 1.92034 2.97452 2.09235 2.35595 3.82147 5.84532 4.48379 27 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 24 3.33801 5.04176 4.38760 4.05979 3.48353 4.10656 4.52374 3.78647 3.94036 3.43473 4.47289 4.21945 4.69949 4.26763 4.16165 3.54843 0.73780 3.54116 5.08777 1.66558 28 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 25 1.81310 4.90405 5.21643 4.64878 3.56592 4.68468 5.07808 2.76271 4.48481 0.88592 2.02847 4.80106 4.98251 4.60367 4.57011 4.02806 3.76229 2.82323 5.48025 4.39369 29 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 26 1.81489 4.48215 4.33225 3.77296 3.66378 3.97791 4.41612 1.64614 3.67143 2.70088 2.77666 4.00032 4.40881 3.91736 3.89414 1.71758 3.20319 2.65055 5.18367 3.98670 30 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 27 4.36799 0.09321 5.83573 5.84386 5.84386 4.65141 6.31540 5.39069 5.78105 5.12668 6.30428 5.67600 5.39529 6.07343 5.68286 4.63228 4.90872 5.00467 6.83446 6.08878 31 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 28 4.46441 6.17795 4.71024 4.24617 5.85439 4.66695 4.94347 5.42552 0.18782 4.78032 5.77989 4.57768 5.16936 4.14508 3.33901 4.49909 4.67861 5.10588 6.50945 5.57282 32 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 29 4.03708 5.26761 5.96126 5.45675 3.74594 5.42459 5.90794 2.53630 5.30701 0.59139 3.50269 5.63023 5.56111 5.30388 5.31943 4.86198 4.27822 1.49981 5.96687 4.93537 33 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 30 1.99857 5.60022 1.25109 2.70416 5.10297 3.70600 4.19216 4.60187 3.08276 4.10280 4.88876 2.56141 4.26566 3.33091 3.61850 1.76562 3.47242 4.13529 6.25557 4.81558 34 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 31 4.46441 6.17795 4.71024 4.24617 5.85439 4.66695 4.94347 5.42552 0.18782 4.78032 5.77989 4.57768 5.16936 4.14508 3.33901 4.49909 4.67861 5.10588 6.50945 5.57282 35 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 32 3.03668 5.30538 3.15004 1.69971 4.89980 3.68391 4.19341 4.35670 3.02476 3.90997 4.70133 3.34566 4.23244 3.33791 3.50125 1.16997 2.07005 3.90948 6.08824 4.71353 36 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01043 4.96393 5.68628 0.61958 0.77255 0.48576 0.95510 33 4.36799 0.09321 5.83573 5.84386 5.84386 4.65141 6.31540 5.39069 5.78105 5.12668 6.30428 5.67600 5.39529 6.07343 5.68286 4.63228 4.90872 5.00467 6.83446 6.08878 37 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00703 4.96054 * 0.61958 0.77255 0.00000 * //