Clavanin
This family consists of clavanin proteins from the haemocytes of the invertebrate Styela clava (Sea squirt), a solitary tunicate. The family is made up of four alpha-helical antimicrobial peptides, clavanins A, B, C and D. The tunicate peptides resemble magainins in size, primary sequence and antibacterial activity. Synthetic clavanin A displays comparable antimicrobial activity to magainins and cecropins. The presence of alpha-helical antimicrobial peptides in the haemocytes of a urochordate suggests that such peptides are primeval effectors of innate immunity in the vertebrate lineage [PMID: 9001389]. |
The below sequences were used to create Clavanin sequence signatures: |
>CAMPSQ572
FLRFIGSVIHGIGHLVHHIGVAL
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>CAMPSQ349
AFKLLGRIIHHVGNFVYGFSHVF
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>CAMPSQ347
VFHLLGKIIHHVGNFVYGFSHVF
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>CAMPSQ346
VFQFLGKIIHHVGNFVHGFSHVF
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>CAMPSQ348
VFQFLGRIIHHVGNFVHGFSHVF
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2015, © Biomedical Informatics Centre, NIRRH, Mumbai |
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