Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.
Enter or paste a set of amino acid sequences in any supported format:
Or, upload a file:
OUTPUT FORMAT Clustal w/o numbers Clustal w/ numbers Pearson/FASTA MSF PHYLIP SELEX STOCKHOLM VIENNA DEALIGN INPUT SEQUENCES no yes
MBED-LIKE CLUSTERING GUIDE-TREE yes no
MBED-LIKE CLUSTERING ITERATION yes no
NUMBER of COMBINED ITERATIONS default(0) 1 2 3 4 5
MAX GUIDE TREE ITERATIONS default 0 1 2 3 4 5
MAX HMM ITERATIONS default 0 1 2 3 4 5
ORDER aligned input
TITLE: If available, the title will be included in the subject of the notification email and can be used as a way to identify your analysis
