Palustrin

Palustrins are antimicrobial peptides obtianed from the skin secretions of frogs [PMID: 21911019, 11087945].

The below sequences were used to create Palustrin sequence signatures:

>CAMPSQ3142
GIFPKIIGKGIVNGIKSLAKGVGMKVFKAGLNNIGNTGCNNRDEC
>CAMPSQ521
GIFPKIIGKGIKTGIVNGIKSLVKGVGMKVFKAGLSNIGNTGCNEDEC
>CAMPSQ531
GIFPKIIGKGIKTGIVNGIKSLVKGVGMKVFKAGLNNIGNTGCNEDEC
>CAMPSQ524
ALFSILRGLKKLGKMGQAFVNCEIYKKC
>CAMPSQ525
ALFSILRGLKKLGNMGQAFVNCKIYKKC
>CAMPSQ526
ALSILRGLEKLAKMGIALTNCKATKKC
>CAMPSQ527
ALSILKGLEKLAKMGIALTNCKATKKC
>CAMPSQ528
GFLSTVKNLATNVAGTVLDTIRCKVTGGCRP
>CAMPSQ529
GFFSTVKNLATNVAGTVIDTLKCKVTGGCRS
>CAMPSQ530
GFLSTVKNLATNVAGTVIDTLKCKVTGGCRS
>CAMPSQ2920
GFISTVKNLATNVAGTVIDTIKCKVTGGC
>CAMPSQ3499
GFMDTAKNVAKNVAVTLIDKLRCKVTGGC
>CAMPSQ3501
GFMDTAKNVAKNVAATLLDKLKCKITGGC
>CAMPSQ3622
GLWDSIKNFGKTIALNVMDKIKCKIGGGCPP
>CAMPSQ3718
GLWNTIKEAGKKFAINVLDKIRCGIAGGCKT
>CAMPSQ2693
LWNSIKIAGKKLFVNVLDKIRCKVAGGCKTSPDVE
>CAMPSQ3508
GLWNSIKIAGKKLFVNVLDKIRCKVAGGCKTSPDVE

The below sequences were retrieved using Palustrin sequence signatures:

> CAMPPalH | CAMPSQ521 | P84262 | 55976267
GIFPKIIGKGIKTGIVNGIKSLVKGVGMKVFKAGLSNIGNTGCNEDEC
> CAMPPalH | CAMPSQ531 | P84281 | 55976286
GIFPKIIGKGIKTGIVNGIKSLVKGVGMKVFKAGLNNIGNTGCNEDEC
> CAMPPalH | CAMPSQ1756 | Q1JS88 | 119390856
GIFPKIIGKGIKTGIVNGIKSLVKGVGMKVFKAGLSNIGNTGCNEDEC
> CAMPPalH, CAMPBreH29 | CAMPSQ2693 | G5ELM2 | 356483035
LWNSIKIAGKKLFVNVLDKIRCKVAGGCKTSPDVE
> CAMPPalH, CAMPBreH29 | CAMPSQ4172 | J7FJT8 | 399143593
MFTMKKSLLLLFFLGTISLSLCEQERDEDEVVEEVKRGLWESIKNFGKKFALNMMEKIKC
KIGGGCPP
> CAMPPalH | CAMPSQ4197 | J9RZ63 | 403398031
MFTLKKSLLLIVLLGIISLSLCEQERNADEDEESEIKRGIFPKIIGKGIKTGIVNGIKSL
VKGVGMKVFKAGLNNIGNTGCNEDEC
> CAMPPalH, CAMPBreH29 | CAMPSQ5343 | B9W1Q2 | 222784742
MFTMKKSLLLLFFLGIVSLSLCEQERGADEDEGEDVEEVKRSLWENFKNAGKQFILNILD
KIRCRVAGGCRT
> CAMPBreP29, CAMPPalH, CAMPBreH33 | CAMPSQ5649 | D3KDU1 | 284930211
MFTFKKSLLLLFFIGTISLSLCEQERDADEDEGEALEEVKRGLWDTIKQAGKNIFLNVLD
KIKCKVAGGCKP
> CAMPPalH, CAMPBreH33 | CAMPSQ5950 | G3XHP0 | 348600237
MFTLKKSLLLLFFLGTISLSLCEQERSADDDEGEAIEQEVKRGFMSTASNVLTNVAGTVM
DKLKCKFTGAC
> CAMPPalH, CAMPBreH29 | CAMPSQ5963 | G4Y020 | 349582260
GIISLTLCEQERDADEDEALEEVKRGIWDSIKTFGKKFALNIMDKIKCKIGGGCPP
> CAMPPalH, CAMPBreH29 | CAMPSQ5964 | G4Y021 | 349582262
GIISLTLCEQERDADEDEVLEEVKRGIWDSIKTFGKKFALNIMDKIKCKIGGGCPP
> CAMPPalH, CAMPBreH29 | CAMPSQ5965 | G4Y022 | 349582264
GIISLSFCEQERDADEDEVLEEVKRGIWDSIKTFGKKFALNIMDKIKCKIGGGCPP
> CAMPPalH, CAMPBreH29 | CAMPSQ5966 | G4Y024 | 349582266
GTISSLCEQEREADEDEVLEEVKRGIWDSIKTFGKKFALNIMDKIKCKIGGGCPP
> CAMPPalH, CAMPBreH29 | CAMPSQ5967 | G4Y025 | 349582270
GTISSLCEQERDANEDEVLEEVKRGIWDSIKTFGKKFALNIMDKIKCKIGGGCPP
> CAMPPalH, CAMPBreH29 | CAMPSQ5968 | G4Y026 | 349582272
GTINFSLCEQERDADEDEVLEEVKRGIWDSIKTFGKKFALNIMDKIKCKIGGGCPP
2015, © Biomedical Informatics Centre, NIRRH, Mumbai