Cyclotide

Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [PMID: 10600388, PMID: 12482862, PMID: 12482868, PMID: 12946412].

The below sequences were used to create Cyclotide sequence signatures:

>CAMPSQ3817
QLPICGETCVLGGCYTPNCRCQYPICVR
>CAMPSQ2996
GLPVCGETCFGGTCNTPGCSCSSWPICTRN
>CAMPSQ3007
GLPTCGETCFGGTCNTPGCTCDPWPVCTHN
>CAMPSQ3505
GLPVCGETCFGGTCNTPGCTCDPWPVCTRN
>CAMPSQ371
GVPICGETCTLGTCYTAGCSCSWPVCTRN
>CAMPSQ202
VCGETCVGGTCNTPGCTCSWPVCTRNGLP
>CAMPSQ3504
GLPVCGETCAGGTCNTPGCSCSWPICTRN
>CAMPSQ3518
GLPVCGETCVGGTCNTPGCGCSWPVCTRN
>CAMPSQ3517
GLPVCGETCVGGTCNTPGCACSWPVCTRN
>CAMPSQ2869
GLPVCGETCVGGTCNTPGCTCSWPVCTRN
>CAMPSQ2869
GLPVCGETCVGGTCNTPGCSCSWPVCTRN
>CAMPSQ2869
GLPICGETCVGGTCNTPGCSCSWPVCTRN
>CAMPSQ956
GSVLNCGETCLLGTCYTTGCTCNKYRVCTKD
>CAMPSQ768
GGTIFDCGETCFLGTCYTPGCSCGNYGFCYGTN
>CAMPSQ3006
GSIPACGESCFKGKCYTPGCSCSKYPLCAKN
>CAMPSQ3009
GLPCGETTCFTGKCYTPGCSCSYPICKKIN
>CAMPSQ3008
GLVPCGETCFTGKCYTPGCSCSYPICKKN
>CAMPSQ3066
SAISCGETCFKFKCYTPRCSCSYPVCK
>CAMPSQ3008
KLCGETCFKFKCYTPGCSCSYPFCK
>CAMPSQ762
GDPTFCGETCRVIPVCTYSAALGCTCDDRSDGLCKRN
>CAMPSQ3621
GTRCGETCFVLPCWSAKFGCYCQKGFCYRN
>CAMPSQ759
GTACGESCYVLPCFTVGCTCTSSQCFKN
>CAMPSQ763
CGESCAMISFCFTEVIGCSCKNKVCYLNSIS
>CAMPSQ3000
SISCGESCAMISFCFTEVIGCSCKNKVCYLN
>CAMPSQ204
SIPCGESCVFIPCTVTALLGCSCKSKVCYKN
>CAMPSQ2997
GIPCAESCVWIPCTVTALLGCSCSNNVCYN
>CAMPSQ204
GIPCAESCVWIPCTVTALIGCGCSNKVCYN
>CAMPSQ770
GIPCAESCVWIPCTVTALVGCSCSDKVCYN
>CAMPSQ4330
GIPCAESCVWIPCTVTAIVGCSCSDKVCYN
>CAMPSQ3003
KIPCGESCVWIPCVTSIFNCKCKENKVCYHD
>CAMPSQ765
KIPCGESCVWIPCVTSIFNCKCENKVCYHD
>CAMPSQ766
KIPCGESCVWIPCLTSVFNCKCENKVCYHD
>CAMPSQ3003
GIACGESCVFLGCFIPGCSCKSKVCYFN
>CAMPSQ3004
KVCYRAIPCGESCVWIPCISAAIGCSCKN
>CAMPSQ3004
GVIPCGESCVFIPCISSVLGCSCKNKVCYRD
>CAMPSQ205
GVIPCGESCVFIPCISTLLGCSCKNKVCYRN
>CAMPSQ758
GVIPCGESCVFIPCISAAIGCSCKNKVCYRN
>CAMPSQ761
GFPCGESCVFIPCISAAIGCSCKNKVCYRN
>CAMPSQ203
GIPCGESCVWIPCISAALGCSCKNKVCYRN
>CAMPSQ3005
GIPCGESCVWIPCISAAIGCSCKSKVCYRN
>CAMPSQ767
AIPCGESCVWIPCISAAIGCSCKNKVCYR
>CAMPSQ767
GLLPCAESCVYIPCLTTVIGCSCKSKVCYKN
>CAMPSQ767
GTFPCGESCVFIPCLTSAIGCSCKSKVCYKN
>CAMPSQ3524
GIPCGESCVFIPCLTSAIDCSCKSKVCYRN
>CAMPSQ3519
GSIPCGESCVFIPCISSVIGCACKSKVCYKN
>CAMPSQ3521
GSIPCGESCVFIPCISAVIGCSCSNKVCYKN
>CAMPSQ3522
GSIPCGESCVFIPCISAIIGCSCSSKVCYKN
>CAMPSQ3523
GSIPCEGSCVFIPCISAIIGCSCSNKVCYKN
>CAMPSQ769
GVPCGESCVFIPCITGVIGCSCSSNVCYLN
>CAMPSQ3520
GIPCGESCVFIPCISSVIGCSCSSKVCYRN
>CAMPSQ764
CGESCVFIPCITSVAGCSCKSKVCYRNGIP
>CAMPSQ760
GIPCGESCVFIPCLTTVAGCSCKNKVCYRN
>CAMPSQ3002
GIPCGESCVFIPCITSVAGCSCKSKVCYRN

The below sequences were retrieved using Cyclotide sequence signatures:

> CAMPCycH | CAMPSQ202 | P56254 | 17433718
VCGETCVGGTCNTPGCTCSWPVCTRNGLP
> CAMPCycH | CAMPSQ203 | P56871 | 17433719
GIPCGESCVWIPCISAALGCSCKNKVCYRN
> CAMPCycH | CAMPSQ204 | P56872 | 17433720
SIPCGESCVFIPCTVTALLGCSCKSKVCYKN
> CAMPCycH | CAMPSQ205 | P56879 | 17433721
GVIPCGESCVFIPCISTLLGCSCKNKVCYRN
> CAMPCycH | CAMPSQ758 | P84637 | 76364163
GVIPCGESCVFIPCISAAIGCSCKNKVCYRN
> CAMPCycH | CAMPSQ759 | P84638 | 76365059
GTACGESCYVLPCFTVGCTCTSSQCFKN
> CAMPCycH | CAMPSQ760 | P84639 | 76365061
GIPCGESCVFIPCLTTVAGCSCKNKVCYRN
> CAMPCycH | CAMPSQ761 | P84640 | 76365062
GFPCGESCVFIPCISAAIGCSCKNKVCYRN
> CAMPCycH | CAMPSQ762 | P84645 | 84027829
GDPTFCGETCRVIPVCTYSAALGCTCDDRSDGLCKRN
> CAMPCycH | CAMPSQ763 | P84522 | 66361400
CGESCAMISFCFTEVIGCSCKNKVCYLNSIS
> CAMPCycH | CAMPSQ764 | P84641 | 76364211
CGESCVFIPCITSVAGCSCKSKVCYRNGIP
> CAMPCycH | CAMPSQ765 | P84642 | 76364212
KIPCGESCVWIPCVTSIFNCKCENKVCYHD
> CAMPCycH | CAMPSQ766 | P84643 | 76364213
KIPCGESCVWIPCLTSVFNCKCENKVCYHD
> CAMPCycH | CAMPSQ767 | P84644 | 76364214
AIPCGESCVWIPCISAAIGCSCKNKVCYR
> CAMPCycH | CAMPSQ956 | P85175 | 152032551
GSVLNCGETCLLGTCYTTGCTCNKYRVCTKD
2015, © Biomedical Informatics Centre, NIRRH, Mumbai