Penaeidin

Penaeidins are unique family of antimicrobial peptides which were initially identified in the hemolymph of the Pacific white shrimp, Penaeus vannamei. These peptides contain an N-terminal termianl proline-rich and a C- terminal cysteine-rich domains [PMID: 12242595].

The below sequences were used to create Penaeidin sequence signatures:

>CAMPSQ732
HSSGYTRPLRKPSRPIFIRPIGCDVCYGIPSSTARLCCFRYGDCCHL
>CAMPSQ617
QGYKSGHTGPYPRPLYGSRPIGLRPITRPDPSCAGCRILTLDDAIACCRRLGRCCSALKG
>CAMPSQ4012
MRLVVCLVFVASFALVCRGQGYKSGHTGPYPRPLYGSRPIGLRPITRPDPSCAGCRIITL
DDAIACCRRLGRCCSALKG
>CAMPSQ344
QVYKGGYTRPIPRPPPFVRPLPGGPIGPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKG
YS
>CAMPSQ342
YRGGYTGPIPRPPPIGRPPLRLVVCACYRLS
>CAMPSQ343
YRGGYTGPIPRPPPIGRPPFRPVCNACYRLSVSDARNCCIKFGSCCHLVK

The below sequences were retrieved using Penaeidin sequence signatures:

> CAMPPenP, CAMPPenH | CAMPSQ342 | P81056 | 3024355
YRGGYTGPIPRPPPIGRPPLRLVVCACYRLS
> CAMPPenP | CAMPSQ343 | P81057 | 3024356
YRGGYTGPIPRPPPIGRPPFRPVCNACYRLSVSDARNCCIKFGSCCHLVK
> CAMPPenP, CAMPPenH | CAMPSQ344 | P81058 | 3024416
QVYKGGYTRPIPRPPPFVRPLPGGPIGPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKG
YS
> CAMPPenH | CAMPSQ617 | Q3Y683 | 73671197
QGYKSGHTGPYPRPLYGSRPIGLRPITRPDPSCAGCRILTLDDAIACCRRLGRCCSALKG
> CAMPPenP, CAMPPenH | CAMPSQ732 | Q962A7 | 157881028
HSSGYTRPLRKPSRPIFIRPIGCDVCYGIPSSTARLCCFRYGDCCHL
> CAMPPenP, CAMPPenH | CAMPSQ1238 | Q963C3 | 25090983
YSSGYTRPLPKPSRPIFIRPIGCDVCYGIPSSTARLCCFRYGDCCHR
> CAMPPenH | CAMPSQ1239 | Q962B1 | 25090979
QGCKGPYTRPILRPYVRPVVSYNACTLSCRGITTTQARSCCTRLGRCCHVAKGYS
> CAMPPenH | CAMPSQ1240 | Q962B0 | 25090978
QGYKGPYTRPILRPYVRPVVSYNACTLSCRGITTTQARSCSTRLGRCCHVAKGYS
> CAMPPenP, CAMPPenH | CAMPSQ1287 | P81059 | 3024417
QVYKGGYTRPVPRPPPFVRPLPGGPIGPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKG
YS
> CAMPPenH | CAMPSQ1288 | P81060 | 3024418
QVYKGGYTRPIPRPPFVRPVPGGPIGPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKGY
S
> CAMPPenH | CAMPSQ1318 | A1IKN6 | 119852243
RLPPGFTPWRIAPAIV
> CAMPPenH | CAMPSQ1343 | Q963D9 | 14719123
MRLVVCLVFLASFALVCQGQVYKGGYTRPVPRPPFVRPLPGGPIGPYNGCPVSCRGISFS
QARSCCSRLGRCCHVGKG
> CAMPPenP | CAMPSQ1487 | Q95NT0 | 25090972
HSSGYTRPLPKPSRPIFIRPIGCDVCYGIPSSTARLCCFRYGDCCHR
> CAMPPenH | CAMPSQ1964 | Q963D9 | 25090996
QVYKGGYTRPVPRPPFVRPLPGGPIGPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKGY
S
> CAMPPenP, CAMPPenH | CAMPSQ1965 | Q963D0 | 25090995
QVYKGGYTRPIPRPPPFVRPLPGGPIGPYNGCPISCRGISFSQARSCCSRLGRCCHVGKG
YS
> CAMPPenH | CAMPSQ1966 | Q963C7 | 25090988
QVYKGGYTRPIPRPPPFVRPLPGGPISPYNGCPVSCRGISFSQARSCCSRLGRCCHVGKG
YS
> CAMPPenP, CAMPPenH | CAMPSQ1967 | Q963C6 | 25090986
QVYKGGYTRPIPRPPPFVRPLPGGPIGPYNGCPISCRGISFSQARSYCSRLGRCCHVGKG
YS
> CAMPPenP, CAMPPenH | CAMPSQ1968 | Q963C5 | 25090985
QVYKGGYTRPIPRPPPFVRPLPGGPIGPYNGRPVSCRGISFSQARSCCSRLGRCCHVGKG
YS
> CAMPPenH | CAMPSQ1969 | Q962B2 | 25090981
QGYKGPYTRPILRPYVRPVVSYNACTLSCRGITTTQARSCCTRLGRCCHVAKGYS
> CAMPPenH | CAMPSQ1970 | Q962A9 | 25090976
QRGGFTGPIPRPPPHGRPPLGPICNACYRLSFSDVRICCNFLGKCCHLVK
> CAMPPenH | CAMPSQ1971 | Q962A8 | 25090975
QGYKGPYTRPILRPYVRPVVSYNVCTLSCRGITTTQARSCCTRLGRCCHVAKGYS
> CAMPPenP, CAMPPenH | CAMPSQ1972 | Q963C4 | 25090919
YRGGYTGPIPRPPPIGRPPLRPVCNACYRLSVSDARNCCIKFGSCCHLVK
2015, © Biomedical Informatics Centre, NIRRH, Mumbai